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Neurosciences
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  1. Home
  2. Programs
  3. Graduate
  4. Neurosciences
  5. Doctor of Philosophy

Doctor of Philosophy

PhDJoint Degree
  • Neurosciences Program opens in a new tab
Program Minimum Units
135 Units
University Minimum Units
135 Units
Program Length
6 Years
Interests
Helping Others, Data and Information Sciences, Experimentation & Discovery
Academic Areas
Medicine, Health Sciences

Overview

Learn how to approach and solve research problems by developing skills in modern methods of neuroscience research, the ability to appraise the scientific literature and make scientific judgments, and ultimately, to function as an independent creative neuroscientist.

Requirements

Program Requirements

Core Courses

Required courses must be taken for a letter grade and passed with a 3.0 (B) or better. MSTP students will take NEPR 209, NEPR 211, NEPR 212, and NEPR 288. MSTP students will take one of NEPR 201, NEPR 203, NEPR 207, or NEPR 208. MSTP students will also take either NEPR 202 or NEPR 204.

Students must also complete the Stanford Immersive Neurosciences (SIN) Boot Camp.

Students must complete special sessions in neuroanatomy. (Not required for MSTP students.)

9 quarters of NEPR 280 (Journal Club) are required. MSTP students in the Neurosciences PhD program are required to take 3 quarters of Journal Club and at least 2 quarters must be taken for 2 units.

Complete all of the following course(s):
NEPR 201

Neuro-Cellular Core

2 Units
NEPR 202

Neurosciences Development Core

2 Units
NEPR 203

Neuroscience Systems Core

2 Units
NEPR 204

Neuroscience Molecular Core

2 Units
NEPR 206

Neuroscience Data Basics

1 Units
NEPR 207

Neurosciences Cognitive Core

2 Units
NEPR 208

Neuroscience Computational Core

2 Units
NEPR 209

Introduction to Mathematical Tools in Neuroscience

1 Units
NEPR 211

Animal Behavior for Neuroscientists

1 Units
NEPR 212

Responsible Conduct of Neuroscience Research

1 Units
NEPR 213

Neurogenetics Core

2 Units
NEPR 280

Neuroscience Journal Club and Professional Development Series

1-2 Units
NEPR 288

Cellular/Molecular Neuroscience Laboratory

1-10 Units

Statistics and Reproducible Research

Students must complete BIOS 217 as well as one graduate statistics course from the list below; pre-approval is required.

Complete all of the following requirements:
Foundations of Statistics and Reproducible Research
Complete all of the following course(s):
BIOS 217

Foundations of statistics and reproducible research

2 Units
and
Additional Statistics Course
Complete 1 - 1 courses and earn at least 3 units in the following course(s):
BIO 141

Introduction to Statistics for Biology

5 Units
COMPMED 211

Robust, reproducible, real-world experimental design and analysis for life and biomedical scientists

3 Units
CS 109

Introduction to Probability for Computer Scientists

3-5 Units
CS 228

Probabilistic Graphical Models: Principles and Techniques

3-4 Units
CS 229

Machine Learning

3-4 Units
or
STATS 229

Machine Learning

3-4 Units
EE 178

Probabilistic Systems Analysis

3-4 Units
EPI 258

Introduction to Probability and Statistics for Clinical Research

3 Units
MS&E 226

Fundamentals of Data Science: Prediction, Inference, Causality

3 Units
PSYCH 204B

Computational Neuroimaging: Data Analyses

3 Units
PSYCH 252

Statistical Methods for Behavioral and Social Sciences

5 Units
STATS 117

Introduction to Probability Theory

3-4 Units
STATS 141

Introduction to Statistics for Biology

5 Units
STATS 191

Introduction to Applied Statistics

3 Units
STATS 200

Introduction to Theoretical Statistics

3-4 Units
STATS 202

Statistical Learning and Data Science

3 Units
STATS 207

Time Series Analysis

3 Units
STATS 215

Statistical Models in Biology

3 Units
STATS 217

Introduction to Stochastic Processes I

3 Units
STATS 219

Stochastic Processes

4 Units
STATS 220

Machine Learning Methods for Neural Data Analysis

3 Units
STATS 305A

Applied Statistics I

3 Units
STATS 315A

Modern Applied Statistics: Learning

3 Units
STATS 320

Machine Learning Methods for Neural Data Analysis

3 Units
STATS 325

Multivariate Analysis and Random Matrices in Statistics

3 Units
STATS 369

Methods from Statistical Physics

3 Units

Required courses must be taken for a letter grade and passed with a 3.0 (B) or better.

Advanced Courses

​​Our program embraces the highly interdisciplinary nature of neuroscience research by allowing students to create an individualized curriculum of advanced topic courses best suited to their research agenda and scientific development needs. This approach has empowered students to take advantage of the breadth of expertise across the university. A minimum of six credits of Advanced Topics coursework is required of each student. Students select the courses while meeting the following criteria: (1) at least one course must be taken with a minimum of three units, (2) the course must have a clear means of evaluation (i.e., problem sets, paper writing, class presentations), and (3) the student must detail how the course relates to the student’s project or domain of neuroscience. This information is submitted in writing along with the course syllabus and examples of problem sets to the co-directors/curriculum committee co-chairs for approval.Six units of advanced neuroscience coursework are required. To complete the six units, at least one course must be three units or more; the remaining units can be completed with a combination of smaller-unit courses (e.g., 3+2+1, 3+2+2, 4+2).

One course of 3 units of advanced neuroscience coursework are required for MSTP students.

Pre-approval for advanced courses is required. 

Required courses must be taken for a letter grade and passed with a 3.0 (B) or better.

Earn at least 6 units.

Rotations

Complete all of the following course(s):
NEPR 299

Directed Reading in Neurosciences

1-18 Units

Students rotate through at least three labs during the first year, enrolling in NEPR 299 each quarter, while taking core courses. MSTP students are exempt from this requirement because they will have completed their rotations in the first year of their MD program.

Graduate Research

Complete all of the following course(s):
NEPR 399

Graduate Research

1-18 Units

Students must complete a graduate research course (NEPR 399) every quarter with a 3.0 (B) or better upon joining a thesis lab until satisfying the 135 minimum units required.

First Author Publication

Students must publish at least one first-author paper in a peer-reviewed major scientific journal on the defended work before completing the PhD degree.

Advancement to Candidacy

Oral Exam

Passing a comprehensive qualifying examination given by the student’s advisory committee is required for admission to PhD candidacy.

The qualifying exam assesses whether the student is ready to advance to candidacy by proposing a thesis project of acceptable scope and feasibility, that the student is prepared to take on the research, has justified the research in terms of background, significance and innovation and has a well-justified approach.

The qualifying exam includes a qualifying exam proposal in the style of an NIH NRSA proposal and a written rigor document which outlines how the proposed research has addressed NIH's four key areas of rigor as well as a plan for dissemination for research outcomes and products.

The qualifying exam must be taken by May 31 of the second year for students starting AY26-27, and by June 30 for those starting AY25-26 and earlier. 

Oral Exam

Oral Examination

Students must defend the dissertation in a University Oral Examination that includes a public seminar. 

Dissertation

Dissertation

Students are required to prepare a PhD dissertation that is the result of an independent investigation accomplished while enrolled in the program that contributes to knowledge in an area of neuroscience.