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Stanford University
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Molecular and Cellular Physiology
School of Medicine
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  1. Home
  2. Programs
  3. Graduate
  4. Molecular And Cellular Physiology
  5. Doctor of Philosophy

Doctor of Philosophy

PhD
  • Molecular and Cellular Physiology opens in a new tab
Program Minimum Units
135 Units
University Minimum Units
135 Units
Program Length
6 Years
Interests
Public Health
Academic Areas
Health Sciences

Overview

The Department of Molecular and Cellular Physiology is located in the Beckman Center for Molecular and Genetic Medicine.

A central goal of physiology in the post-genomic era is to understand how thousands of encoded proteins serve to bring about the highly coordinated behavior of cells and tissues. Research in the department approaches this goal at many levels of organization, ranging from single molecules and individual cells to multicellular systems and the whole organism. The faculty share common interests in the molecular mechanisms of cell signaling and behavior, with a special focus on structure/function analysis of ion channels and G-protein coupled receptors, and their roles at the cellular, organ, and whole-organism levels; the molecular basis of sensory transduction, synaptic transmission, plasticity and memory; the role of ion channels and calcium in controlling gene expression in neural and immune cells; and the regulation of vesicle trafficking and targeting, cell polarity, and cell-cell interactions in the nervous system and in epithelia. Research programs employ a wide range of approaches, including molecular and cell biology, biochemistry, genetics, biophysics, x-ray crystallography, and solution NMR, electrophysiology, and in vitro and in vivo imaging with confocal and multi-photon microscopy.

Requirements

Program Requirements

Required Courses

Complete all of the following course(s):
BIOS 200

Foundations in Experimental Biology

5 Units
BIOS 217

Foundations of statistics and reproducible research

2 Units
MCP 207

MCP Bootcamp

1-2 Units
MCP 208

MCP Journal Club and Professional Development Series

1-2 Units
MCP 221

Advanced Cell Biology

3 Units
MCP 256

How Cells Work: Energetics, Compartments, and Coupling in Cell Biology

4 Units

Molecular Biology

Students should have basic competency in molecular biology. 

This requirement can be met based on undergrad curriculum/research. If not met, then the Stanford undergrad course BIO 83 can be taken to meet the requirement.

Complete all of the following course(s):
BIO 83

Biochemistry & Molecular Biology

4 Units

Note: If this course is taken, its units will not be applied to the unit requirement for the PhD, per University policy.

Electives

Students should complete the equivalent of 2 elective courses.

Of the elective course options listed below, BIOC 241 and MCP 222 are considered 'full-value' courses, where each counts as 1 course.

The other elective course options ( BIOS 202, BIOS 294, NEPR 201, and NEPR 204) are considered 'mini-courses,' and each counts as half a course. 2 minicourses count as 1 'full-value' course.

Student can choose from one of the three sets of options below to complete the Electives requirement.

Complete any of the following requirements:
Two Full-Value Courses
Complete all of the following course(s):
BIOC 241

Biological Macromolecules

3-5 Units
MCP 222

Imaging: Biological Light Microscopy

3-5 Units
or
One Full-Value Course and Two Minicourses
Complete all of the following requirements:
Full-Value Course
Complete any of the following course(s):
BIOC 241

Biological Macromolecules

3-5 Units
MCP 222

Imaging: Biological Light Microscopy

3-5 Units
and
Minicourses
Complete at least 2 of the following courses:
BIOS 202

Understanding Kinetics for Biologists and Biology

3 Units
BIOS 294

Chemistry for Biologists and Others

3 Units
NEPR 201

Neuro-Cellular Core

2 Units
NEPR 204

Neuroscience Molecular Core

2 Units
or
Four Minicourses
Complete all of the following course(s):
BIOS 202

Understanding Kinetics for Biologists and Biology

3 Units
BIOS 294

Chemistry for Biologists and Others

3 Units
NEPR 201

Neuro-Cellular Core

2 Units
NEPR 204

Neuroscience Molecular Core

2 Units

Advanced Graduate Courses or Minicourses

Advanced graduate courses or minicourses for a minimum of 6 units total. These courses do not need to be MCP courses but must be in a relevant scientific topic and approved by the Director of Graduate Studies. 

Service Requirement

Every scientist is expected to provide service to the profession. As a result, we expect all graduate students in the MCP program to participate in a service activity. Before graduation, you are expected to have performed a minimum of 40 hours, and you will be asked to document this before your 5th year in the program.

Laboratory Rotations

In addition to the course requirements detailed above, a student is expected to complete laboratory rotations during the first year - completing MCP 299, or an equivalent course. 

While students typically explore three rotations, a student may opt to do a greater number of shorter rotations, as long as the rotation process is completed by May 15 of the first academic year of study.

The first of these rotations must be in a laboratory within the Department, while subsequent rotations may be in any laboratory within the Stanford Biosciences Program.

The first rotation should last 8 to 10 weeks and each subsequent rotation shall last no longer than 8 weeks. Shorter rotations are encouraged, as long as the total length of the rotations is between 20 and 26 weeks.

MCP requires a lab rotation evaluation to be completed by faculty member and student at the end of the rotation. Continuation of rotations beyond May 15 will require the approval of the Director of Graduate Studies.

Additional rotations and/or time for rotations will be considered in special circumstances, but in all cases, students should plan to join a dissertation lab no later than the beginning of Fall Quarter of the second year. Dissertation and University Oral Examination

The results of independent, original work by the students are presented in a dissertation. The oral examination is largely a defense of the dissertation.

Complete all of the following course(s):
MCP 299

Directed Reading in Molecular and Cellular Physiology

1-18 Units

NRSA Proposal

Proposal should be submitted by the 3rd year of study.

Training Grant/Qualifying Committee Courses

Students should complete any additional courses required by their training grant or Qualifying Committee.

First Author Publication

Student must be the first author on a published paper containing the results of their original scientific research. To meet the graduation requirement, this paper must be complete and at least under review at a legitimate peer-reviewed journal (with an ISSN) or published.

Research Requirement

Courses

Complete additional research units to meet the minimum unit requirement.

Complete all of the following course(s):
MCP 399

Graduate Research

1-18 Units

Advancement to Candidacy

Conditions

All students in the program must pass a qualifying examination to advance to candidacy for the Ph.D. It is expected that students take the qualifying examination by the end of the Autumn Quarter in the second year of study. Failure to take the qualifying exam by the end of Autumn Quarter of the second year of study is taken as evidence of unsatisfactory progress in the program. In any case, where a student thinks they need additional time to schedule and take their exam, a request must be submitted in writing to the Director of Graduate Studies (DGS) by November 15 of Autumn Quarter. The DGS may opt to grant additional time in compelling circumstances that do not indicate poor progress or may refer the matter to the graduate committee for further action.

Students are given two chances to unconditionally pass the qualifying examination. Failure to achieve an unconditional pass of the qualifying examination by the end of the Spring Quarter of the second year is grounds for dismissal from the program.

Students form a qualifying examination committee consisting of at least 3 faculty members (members of the academic council, including the dissertation advisor), at least one of whom must be a member of MCP. This committee should be formed by the end of Spring Quarter of the first year of study. The composition of this committee should be approved by the Director of Graduate Studies. Students should also check with the department's student services office to make sure to file all required paperwork by the end of Spring Quarter. The University maintains certain deadlines for filing for candidacy, and it is the student’s responsibility to be aware of these deadlines.

Dissertation

The results of students' independent, original work are presented in a dissertation. The oral examination is largely a defense of the dissertation.