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Microbiology and Immunology
School of Medicine
  • MS
  • PhD
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  • Master of Science
  • Doctor of Philosophy
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  1. Home
  2. Programs
  3. Graduate
  4. Microbiology And Immunology
  5. Doctor of Philosophy

Doctor of Philosophy

PhD
  • Microbiology and Immunology opens in a new tab
Program Minimum Units
30 Units
University Minimum Units
135 Units
Program Length
6 Years
Interests
Helping Others, Technology, Experimentation & Discovery
Academic Areas
Health Sciences, Medicine and Pre-Medicine

Overview

The PhD degree requires coursework and independent research demonstrating an individual’s creative, scholastic, and intellectual abilities. On entering the department, students are oriented to the curriculum and the timetable for completing the degree requirements by the Director of Graduate Studies (DGS) and the Student Services Officer (SSO).

Requirements

Program Requirements

Required Courses

During the first year of graduate study in the department, each student will take seven upper-level (200-series) courses for a total of 10 units.

Complete all of the following course(s):
BIOS 200

Foundations in Experimental Biology

5 Units
BIOS 216

The Practice of Reproducible Research

2 Units
BIOS 217

Foundations of statistics and reproducible research

2 Units
MED 255

The Responsible Conduct of Research

1 Units
MI 210

Microbe-Host Interactions in Health and Disease

4 Units
MI 215

Principles of Biological Technologies

3 Units
MI 250

Frontiers in Microbiology and Immunology

1 Units

Students will typically participate in three laboratory rotations (one rotation per quarter) during their first year of study.

Core Courses

Complete at least 1 of the following courses:
BIO 214

Advanced Cell Biology

3 Units
GENE 205

Advanced Genetics

3 Units
IMMUNOL 201

Advanced Immunology I

3 Units
MI 200

Cellular and Molecular Immunology: An Introductory Course

4 Units

Elective Course

Complete at least 1 of the following courses:
BIOC 241

Biological Macromolecules

3-5 Units
BIOE 221G

Gut Microbiota in Health and Disease

3 Units
DBIO 210

Developmental Biology

4 Units
GENE 211

Genomics

3 Units
IMMUNOL 202

Advanced Immunology II

3 Units
MCP 256

How Cells Work: Energetics, Compartments, and Coupling in Cell Biology

4 Units
STATS 141

Introduction to Statistics for Biology

5 Units

Additional Requirements

First- and second-year graduate students must participate in a bi-weekly journal club.

Additionally, students must complete two ethics courses within their first three years of the program. Students are required to enroll in MED 255 in year one and are required to take the department’s RCR mini course when offered in Spring term (this in house course is offered every other year). It’s expected that all students attend the RCR mini course in their 2nd and 3rd  year(s) regardless of serving on the T32 grant or not. Students should have both ethics requirements completed by the end of year

Teaching Requirement

Teaching Requirement

Teaching experience and training are also important parts of the graduate curriculum. Graduate students are required to act as teaching assistants for at least one course during their first three years.

Advancement to Candidacy

Advancement to Candidacy

In autumn quarter of the second year, each student defends orally a formal research proposal on a topic related to the intended thesis project. This qualifying examination proposal is due to the thesis committee two weeks before the oral defense. In spring quarter of the second year, this research proposal will be updated to incorporate the student’s research progress. This will be followed by a thesis committee meeting where the student presents their data and discusses plans.   The student should send their updated research proposal to the committee two weeks in advance of the meeting and the meeting should be completed by the end of spring quarter. The student is admitted to candidacy based on successful performance on the qualifying exam and the thesis committee meeting.

Oral Exam

Oral Exam

Ph.D. candidates are expected to complete and defend their dissertation within three years of advancing to candidacy. The University Oral Examination tests a student's command of their field following completion of the written dissertation.

The defense includes a one-hour public seminar, followed by a closed-door examination with the committee.

Dissertation

Dissertation

Submission of an approved doctoral dissertation to the degree program and the Committee on Graduate Studies is required for the PhD degree. The doctoral dissertation is expected to be an original contribution to scholarship or scientific knowledge, to exemplify the highest standards of the discipline, and to be of lasting value to the intellectual community. Every doctoral dissertation is read and approved by members of the Stanford faculty to ensure that standards for programmatic and university quality are met. Standards for professional presentation of doctoral work have been established by the Committee on Graduate Studies.

An approved doctoral dissertation is required for the PhD degree. Every doctoral dissertation is read and approved by the three members of the student’s doctoral dissertation reading committee.