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Stanford University
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Earth System Science
Stanford Doerr School of Sustainability
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  • Master of Science
  • Doctor of Philosophy
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  1. Home
  2. Programs
  3. Graduate
  4. Earth System Science
  5. Doctor of Philosophy

Doctor of Philosophy

PhD
  • Earth System Science opens in a new tab
Program Minimum Units
135 Units
University Minimum Units
135 Units
Program Length
6 Years
Interests
Data and Information Sciences, Ecology & Environment, Sustainability, Experimentation & Discovery
Academic Areas
Sustainability, Earth & Energy, Natural Sciences

Overview

The doctoral program in Earth System Science at Stanford University prepares the next generation of scientists to tackle the world's most pressing environmental challenges through rigorous interdisciplinary training and cutting-edge research.

Earth System Science is the study of the world's air, water, land, and life as an integrated system. Our program unites basic and purpose-driven research to understand how the Earth functions, the many ways it is changing, and what the consequences of these changes will be for people and other species. We train students to understand, predict, and respond to human-caused and natural environmental change at local to global scales.

Doctoral students engage with fundamental Earth system science, from ocean circulation and biogeochemical cycles to climate dynamics, while also addressing critical sustainability challenges related to food, water, energy, biodiversity, climate change, and environmental justice. Our students study the food we eat, the water we drink, the air we breathe, and the plants and animals with which we share the planet, all while developing as independent researchers capable of making significant scientific contributions.

Requirements

Program Requirements

Required Core Courses

Students are required to take three 2-unit courses during the first year

Complete all of the following course(s):
ESS 305

Earth System Perspectives I

2 Units
ESS 306

Earth System Perspectives II

1 Units
ESS 307

Research Proposal Development and Delivery

2 Units

Distribution Requirements

Students must take one class from each of the following three areas within the first or second year

Complete all of the following requirements:
Area A: Analysis of the Earth System

Students must take one course to fulfill the Area A requirement. Alternative courses may be approved via petition.

Complete any of the following course(s):
BIO 231

Environmental Data Analysis

3 Units
CS 229

Machine Learning

3-4 Units
CS 230

Deep Learning

3-4 Units
CEE 362A

Uncertainty Quantification

3 Units
CME 204

Partial Differential Equations in Engineering

3 Units
CME 215

Machine Learning and the Physical Sciences

3 Units
DATASCI 294B

Data Science for Computational Molecular Biology

3 Units
ENERGY 260

Uncertainty Quantification in Data-Centric Simulations

3 Units
EPS 240

Data Science for Geoscience

3 Units
GEP 268

Topics and Methods in Global Environmental Policy I

3-5 Units
STATS 200

Introduction to Theoretical Statistics

3-4 Units
STATS 202

Statistical Learning and Data Science

3 Units
STATS 202F

Statistical Learning and Data Science [Flipped]

3 Units
STATS 206

Applied Multivariate Analysis

3 Units
STATS 207

Time Series Analysis

3 Units
OCEANS 243H

Quantitative Methods for Marine Ecology and Conservation

4 Units
and
Area B: Measurement of the Earth System

Students must take one course to fulfill the Area B requirement. Alternative courses may be approved by petition.

Complete any of the following course(s):
ESS 210

Techniques in Environmental Microbiology

1-4 Units
ESS 224

Remote Sensing of Hydrology

3 Units
ESS 241

Remote Sensing of the Oceans

3-4 Units
ESS 259

Environmental Microbial Genomics

1-3 Units
ESS 262

Remote Sensing of Land

3 Units
EDUC 450C

Qualitative Interviewing

3-5 Units
GEOPHYS 250

Fiber Sensing for a Sustainable Planet

3 Units
OCEANS 306

Observational Methods in Coastal Oceanography

3 Units
and
Area C: Earth System Processes, Models, and Human-Environmental Interactions

Students must take one course to fulfill the Area C requirement. Alternative courses may be approved via petition.

Complete any of the following course(s):
ESS 205

Fundamentals of Geobiology

3 Units
ESS 206

World Food Economy

3-5 Units
ESS 220

Physical Hydrogeology

4 Units
ESS 223

Biosphere-Atmosphere Interactions

3-4 Units
ESS 227

Decision Science for Environmental Threats

3-5 Units
ESS 230

Pursuing Sustainability: Managing Complex Social Environmental Systems

3 Units
ESS 244

Marine Ecosystem Modeling

3 Units
ESS 246A

Atmosphere, Ocean, and Climate Dynamics: The Atmospheric Circulation

3 Units
ESS 246B

Atmosphere, Ocean, and Climate Dynamics: the Ocean Circulation

3 Units
ESS 247

Tropical Meteorology

3-4 Units
ESS 258

Geomicrobiology

3 Units
ESS 259

Environmental Microbial Genomics

1-3 Units
ESS 267

Climate Change & Extreme Weather

3 Units

Annual Review

Each year, the department evaluates students to assess progress to a degree, identify areas of strength, provide helpful resources, and note potential issues or areas of concern. This annual review includes a record of accomplishments presented by the student, written evaluations by the faculty advisor of the student’s progress, and (after the first year) committee feedback on the academic and research progress of the student. The student should have no ‘I’ grades in core courses, maintain a 3.0 grade-point average, and show evidence of productive and sustained research progress with no conflict of interest or commitment.

Possible outcomes of the annual review include:

  1. Continuation of the student in good standing

  2. Notifying the student that they are not making academic progress, with specific written guidelines for the necessary steps to reinstatement to good standing.

Annual reviews are required for all PhD students, including first-year PhD students. In the first year, the annual assessment is conducted between the student and the PhD advisor(s) (before forming a doctoral committee). After the first year, the annual review must be conducted between the student and the student’s doctoral committee. The committee should meet as a group simultaneously, although in the cases of extreme scheduling conflict a separate meeting can be organized with one of the committee members. In the unusual case where second-year PhD students have obtained approval for a delay in the qualifying exam, this annual review meeting should include a closed committee session. Post-candidacy review meetings typically last for one hour.

The student and advisor must complete and sign the written annual review form in all years. In the year students are undertaking their candidacy exam (research qualifying exam), that exam serves as the annual review. In addition, any student who has scheduled the dissertation defense and petitioned to graduate in Axess may elect not to hold an additional yearly review meeting.

Teaching Requirement

Teaching Assistantship

As a program requirement, students in ESS complete a minimum of two TA quarters. These should be the equivalent of a 25% position. In addition, additional TA quarters may be considered and/or required in consultation with the research advisor, depending on academic goals and funding availability.

Advancement to Candidacy

Candidacy Overivew

Admission to candidacy for the doctoral degree is a judgment by the faculty in the department or school of the student’s potential to successfully complete a Ph.D. It occurs when a student passes a qualifying exam and completes their required coursework. University policy is that admission to candidacy must normally occur by the end of the second year in the PhD program. Requests for extensions on this timeline must be provided in writing and approved by both the advisor and the Director of Graduate Students. They cannot be supported without sufficient cause (e.g., advisor on sabbatical). Scheduling constraints are generally not considered adequate cause. 

The qualifying process consists of two components

  1. Evaluation of a written document containing a proposal for the student’s PhD research

  2. An oral examination

The first component, the research proposal, is a document whose text is up to – but no more than – 10 single-spaced pages in length (inclusive of figures, but exclusive of references, minimum 11 point font). It cannot include any supplementary text or appendices. The research proposal must concisely review the background literature and discuss the proposed problem, its importance, and the methods to be applied to the problem. The proposal must be well thought out, carefully written and edited, and finished with appropriate references and illustrations. It must be sent to the committee in final form at least two weeks before the date of the oral examination, and it must be reviewed by the advisor before being sent to the committee. Note that proposals that are longer than the maximum length can be sent back to the student for revision. 

The second component, the qualifying examination, is a wide-ranging examination of the feasibility of the proposed research and the student’s preparedness to complete it. It starts with a presentation of no longer than 30 minutes, followed by a question and answer period, with questions from all committee members. These questions can cover the proposed research, the subfield in which it falls, and topics in which you should be proficient to conduct the research. The qualifying examination must be scheduled for at least 2.5 hours and for no more than 3 hours, although it may end earlier than the scheduled time. A 3 hour scheduling block is ideal, but this can be shortened to 2.5 hours in case of scheduling difficulties.  

These two components (the written document and the qualifying examination) are judged by the student’s Examining Committee. The committee, including your faculty advisor or advisors, must consist of at least 4 and no more than 5 members, at least 3 of whom are academic council members at Stanford, and at least 2 of whom are appointed as faculty in the Department of Earth System Science. The committee must have a designated chair who is on the Academic Council, but who is not the student's dissertation research advisor(s). The chair’s Stanford appointment can be in either the Department of Earth System Science or a different Stanford department. The Examining Committee is typically, but not necessarily, the same as the university reading committee that evaluates the doctoral work. The outcome of the exam may be a ‘pass’, a ‘conditional pass’, a ‘retake’, or a ‘fail’. In the case of a conditional pass, a range of possible conditions can be imposed by the committee. In the case of a ‘retake’, the student is required to retake the exam in the next quarter (or if the exam is held in the spring quarter, this can be two quarters later). A student who received a ‘fail’ cannot continue in the program. However, if a student who failed the qualifying exam feels that the qualifying exam was performed in an unfair or inequitable manner, they may appeal to the department chair or Director of Graduate Studies (DGS) to request a new examination. Policies governing such appeals are described in the department handbook.

When evaluating the exam, the committee will assess the student's preparedness for completing the PhD along multiple axes:

  1. Ability to synthesize existing literature and articulate both knowledge gaps and important outstanding questions.

  2. Ability to communicate advanced topics clearly in writing and through verbal/visual displays. 

  3. Critical reasoning

  4. Domain expertise

  5. Feasibility of the proposed research and the student’s ability to conduct it

Oral Exam

University Oral Exam Overview

The doctoral dissertation is defended in the university oral examination.

Dissertation

Dissertation Overview

Under the supervision of the research advisory committee, the candidate must prepare a doctoral dissertation that is a contribution to knowledge and is the result of independent research. The format of the dissertation must meet university guidelines. The student is urged to prepare dissertation chapters that, in scientific content and format, are readily publishable.