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Stanford University
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Chemistry
School of Humanities & Sciences
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  • Master of Science
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  2. Programs
  3. Graduate
  4. Chemistry
  5. Doctor of Philosophy

Doctor of Philosophy

PhD
  • Chemistry opens in a new tab
Program Minimum Units
135 Units
University Minimum Units
135 Units
Program Length
6 Years
Interests
Experimentation & Discovery, Technology
Academic Areas
Natural Sciences, Medicine and Pre-Medicine

Overview

Chemistry is about the nature of matter, how to make it, measure it, and model it. In that sense, chemistry really matters; it is essential to explaining the real world. It holds the key to making new drugs, creating new materials, and understanding and controlling material properties. It is no wonder that chemistry is called the “Central Science.” Traditionally, it is divided into subdisciplines, such as organic, inorganic, physical, biological, theoretical, and analytical. Yet, these distinctions increasingly blur as it becomes clear that all science, chemistry included, is interconnected. 

A deeper understanding of chemistry enables students to participate in research spanning biotechnology, nanotechnology, catalysis, human health, materials, earth and environmental sciences, and more. Faculty, postdoctoral scholars, and graduate and undergraduate students work side by side to develop new probes of biological molecules, model protein folding and reactivity, manipulate carbon nanotubes, develop new oxidation and polymerization catalysts, and synthesize organic molecules to probe ion channels. Uniting of these pursuits is a shared focus at the atomic and molecular levels, whether this concerns probing the electronic structure and reactivity of molecules as small as dihydrogen or synthesizing large polymer assemblies. The ability to synthesize new molecules and materials and to modify existing biological structures allows the properties of complex systems to be analyzed and harnessed with tremendous benefit to both the scientific community and society at large.

This is a full time program, doctoral students in the Chemistry PhD program are expected to maintain physical presence on campus throughout their graduate studies. This ensures ready access to advisors and mentors, libraries, and other resources that support timely progress towards degree completion. Being on campus also embeds students in the academic and campus community, supporting their continued professional development.

Requirements

Program Requirements

General Requirements

For Autumn quarter of their first year, graduate students are required to enroll in Chem 291 to learn about research opportunities from Chemistry faculty. They are also required to enroll in Chem 299 to learn how to be an effective teaching assistant and graduate student in Chemistry.

Students may concentrate in organic, inorganic chemical biology, physical, or biophysical chemistry. All graduate students are required to take six graduate-level lecture courses (course numbers greater than 200) of at least three units each in chemistry or related disciplines (e.g., biochemistry, electrical engineering, mathematics, chemical engineering, chemical and systems biology, physics, materials science), selected in consultation with their research advisor or the Graduate Study Committee. All six courses must be taken for a letter grade. Two Chemistry courses must be taken in the Autumn quarter and another two Chemistry courses in the Winter quarter of the first year. Students are expected to complete all coursework before the end of the third year.

Courses taken outside of Chemistry require prior approval from the student's research advisor or the Graduate Study Committee.

Research

Before TGR, students are required to maintain continuous enrollment in Chem 200 (minimum 2 units per quarter) to conduct chemical research, either rotation research before joining a research lab or dissertation research afterward. Students are expected to maintain satisfactory research progress determined by the thesis committee.

Qualifying Exam (second year)

Students take the qualifying exam by the end of the Spring quarter of their second year. This is an important milestone. Successful completion of the Progress Report is required for advancement to PhD candidacy. Students will be evaluated on their knowledge and critical thinking in Chemistry, their research progress and demonstrated ability to conduct independent research in Chemistry, and the quality and feasibility of the proposed future research plan. Those who fail the qualifying exam may appeal to the Graduate Studies Committee. Upon approval, they have the opportunity to retake the exam within 10 weeks of the initial exam and before the end of their second year.

Department Seminar (all years)

All students are expected to attend department colloquia (Chem 300) and seminars (Chem 329, 359, 379) when they are available.

Research Seminar (third year)

Students are required to give a department seminar on their research by the Summer quarter of their third year. 

Committee Meeting (third year)

Students are required to complete a thesis committee meeting by the end of the Spring quarter of their third year.  

Research Proposal Defense (fourth year)

Students are required to write a research proposal and defend it in front of their reading committee. They also need to complete a thesis committee meeting to report their research progress and plan for graduation, by the end of the Spring quarter of their fourth year. . 

Additional Committee Meetings

If a student does not plan to do their dissertation defense by the end of their fifth year, they are expected to schedule a thesis committee meeting in the Spring quarter of their fifth year. If a student has not defended their dissertation by the end of their sixth year, they are expected to schedule quarterly thesis committee meetings starting from the Autumn quarter of their seventh year.

Students concentrating in physical or biophysical chemistry or chemical physics must also complete:

Complete all of the following course(s):
CHEM 271

Advanced Physical Chemistry

3 Units
CHEM 273

Advanced Physical Chemistry

3 Units

Pre-Approved Chemistry Courses

Complete any of the following course(s):
CHEM 221

Advanced Organic Chemistry I

3 Units
CHEM 223

Advanced Organic Chemistry II

3 Units
CHEM 225

Advanced Organic Chemistry III

3 Units
CHEM 232

Applications of NMR Spectroscopy

3 Units
CHEM 251

Advanced Inorganic Chemistry

3 Units
CHEM 253

Advanced Inorganic Chemistry

3 Units
CHEM 255

Advanced Inorganic Chemistry

3 Units
CHEM 261

Computational Electronic Structure of Molecular Systems

3 Units
CHEM 263

Machine Learning for Chemical and Dynamical Data

3 Units
CHEM 271

Advanced Physical Chemistry

3 Units
CHEM 273

Advanced Physical Chemistry

3 Units
CHEM 274

Electrochem Lab: Measuring the Invisible

3 Units
CHEM 275

Quantum mechanics with spectroscopy examples

3 Units
CHEM 281

Synthesis and Analysis at the Chemistry-Biology Interface

3 Units
CHEM 283

Therapeutic Science at the Chemistry - Biology Interface

3 Units
CHEM 285

Biophysical Chemistry

3 Units

Acceptable courses outside of Chemistry

Complete any of the following course(s):
APPPHYS 204

Quantum Materials

4 Units
APPPHYS 273

Solid State Physics II

3 Units
BIO 218

Visualizing Biomolecules

3 Units
BIO 230

Cellular and Molecular Immunology: An Introductory Course

4 Units
BIO 232

Advanced Imaging Lab in Biophysics

4 Units
BIOC 224

Advanced Cell Biology

3 Units
BIOE 221G

Gut Microbiota in Health and Disease

3 Units
BIOE 222

Physics and Engineering Principles of Multi-modality Molecular Imaging of Living Subjects

3-4 Units
BIOE 240

Principles of Synthetic Biology

3 Units
BIOE 241

Biological Macromolecules

3-5 Units
BIOE 355

Advanced Biochemical Engineering

3 Units
BIOPHYS 232

Advanced Imaging Lab in Biophysics

4 Units
BIOPHYS 241

Biological Macromolecules

3-5 Units
BIOPHYS 279

Computational Biology: Structure and Organization of Biomolecules and Cells

3 Units
CBIO 240

Molecular and Genetic Basis of Cancer

4 Units
CBIO 242

Cellular and Clinical Aspects of Cancer

4 Units
CHEMENG 320

Chemical Kinetics and Reaction Engineering

3 Units
CHEMENG 345

Fundamentals and Applications of Spectroscopy

3 Units
CHEMENG 432

Electrochemical Energy Conversion

3 Units
CHEMENG 443

Principles and practice of heterogeneous catalysis

3 Units
CHEMENG 450

Advances in Biotechnology

3 Units
CHEMENG 464

Polymer Chemistry

3 Units
CHEMENG 466

Polymer Physics

3 Units
CHEMENG 469

Solid Structure and Properties of Polymers

3 Units
CHEMENG 475

Electrochemical Water Treatment: Materials and Processes

3 Units
CME 213

Introduction to parallel computing using MPI, openMP, and CUDA

3 Units
CME 309

Randomized Algorithms and Probabilistic Analysis

3 Units
CME 364A

Convex Optimization I

3 Units
CS 228

Probabilistic Graphical Models: Principles and Techniques

3-4 Units
CS 229

Machine Learning

3-4 Units
CS 231N

Deep Learning for Computer Vision

3-4 Units
CS 279

Computational Biology: Structure and Organization of Biomolecules and Cells

3 Units
CS 448B

Data Visualization

3-4 Units
CSB 240B

A Practical Approach to Drug Discover and Development

3-4 Units
CSB 260

Concepts and Applications in Chemical Biology

3 Units
EE 212

Integrated Circuit Fabrication Processes

3 Units
EE 216

Principles and Models of Semiconductor Devices

3 Units
EE 228

Basic Physics for Solid State Electronics

3 Units
EE 236C

Lasers

3 Units
EE 261

The Fourier Transform and Its Applications

3 Units
EE 268

The Engineering Economics of Electricity Markets

3 Units
EE 292C

Chemical Vapor Deposition and Epitaxy for Integrated Circuits and Nanostructures

1 Units
EE 346

Introduction to Nonlinear Optics

3 Units
EE 263

Matrix Methods: Singular Value Decomposition

3 Units
EE 364A

Convex Optimization I

3 Units
ENERGY 272R

Engineering Future Electricity Systems

3 Units
GENE 205

Advanced Genetics

3 Units
GENE 214

Representations and Algorithms for Computational Molecular Biology

1-4 Units
IMMUNOL 200

Cellular and Molecular Immunology: An Introductory Course

4 Units
MATSCI 205

Waves and Diffraction in Solids

3-4 Units
MATSCI 209

Electronic and Optical Properties of Solids

3-4 Units
MATSCI 210

Organic and Biological Materials

3-4 Units
MATSCI 214

Structure and Symmetry

3 Units
MATSCI 225

Biochips and Medical Imaging

3 Units
MATSCI 256

Solar Cells, Fuel Cells, and Batteries: Materials for the Energy Solution

3-4 Units
MATSCI 303

Principles, Materials and Devices of Batteries

3 Units
MATSCI 320

Nanocharacterization of Materials

3 Units
MATSCI 323

Thin Film and Interface Microanalysis

3 Units
MCP 221

Advanced Cell Biology

3 Units
ME 364

Optical Diagnostics and Spectroscopy

3 Units
PHYSICS 212

Statistical Mechanics

3 Units
PHYSICS 240

Introduction to the Physics of Energy

3 Units
PHYSICS 241

Introduction to Nuclear Energy

3 Units
STATS 200

Introduction to Theoretical Statistics

3-4 Units

Additional Courses

Complete all of the following course(s):
CHEM 291

Exploring Advanced Chemical Research at Stanford

1 Units
CHEM 299

Teaching of Chemistry

1-3 Units

Teaching Requirement

Although teaching is not a requirement for the degree, students may teach as part of the financial support commitment and their professional training.

Research Requirement

During Autumn and Winter quarters of the first year, students are required to arrange research rotations with faculty. For each quarter, students must submit a completed rotation form to the chair(s) of the Graduate Studies Committee in order to receive a grade for Chem 200 . Upon joining a research lab, a signed letter by the primary advisor needs to be submitted to the Department as research begins under the advisor’s supervision. Non ChEM-H CBI students must join a lab by the end of the Winter quarter of the first year of graduate registration. ChEM-H CBI students must join a lab by the end of the Spring quarter of the first year of graduate registration. Failing to join a lab by the deadline indicates unsatisfactory research progress, which may result in dismissal from the program. In this circumstance, students shall consult with the Graduate Studies Committee for the next step. 

Advancement to Candidacy

Advancement to Candidacy

Admission to candidacy is a judgement by the faculty of a student’s potential to successfully complete the requirements of the degree program. Students are expected to take the PhD qualifying exam and apply for candidacy by the end of the Spring quarter of their second year in the program. A written progress report must be submitted to the thesis committee one week prior to the qualifying exam. Qualifying procedures in the Department of Chemistry include satisfactory completion of at least five lecture course requirements, identification of an advisor by the end of the Winter quarter of the first year, successfully passing the qualifying exam, and making satisfactory progress on a dissertation research project determined by the thesis committee.

Students who are not advanced to candidacy will be dismissed from the program.

Oral Exam

Oral Exam

In the Department of Chemistry, the oral exam is a defense of the dissertation presented upon the completion of a substantial portion of the dissertation or upon completion of a draft of their dissertation. Students consult with their dissertation advisor and reading committee members on the timing of the defense. Students are expected to complete this milestone by the end of the sixth year in the program.

Before candidates may request the scheduling of the University Oral Examination, clearance must be obtained from the dissertation advisor, and an academic review meeting must be scheduled with the Student Services Manager for the Department of Chemistry.

Dissertation

Dissertation

Students are required to submit an approved dissertation that makes an original contribution to chemical science. Students are expected to submit the dissertation in the same quarter that they complete the oral exam, and no later than the subsequent quarter.   During the period in which faculty members are reading a dissertation, candidates are expected to be available for consultation until the dissertation has received final department approval.

Students must submit their revised draft of dissertation to the reading committee at least two weeks before the university submission deadline.