Doctor of Philosophy
PhDOverview
The Biomedical Physics PhD program aims to offer unique interdisciplinary training in physics and engineering applied to solve clinical problems. This burgeoning translational field integrates topics including medical physics, diagnostic imaging, and molecular imaging and diagnostics. Synergistic with multiple departments and institutes from the School of Medicine, Engineering, and Humanities and Sciences, the BMP program leverages Stanford’s outstanding faculty, research, and resources to create a world-class training program. It targets physics, bioscience, and engineering students seeking to become the next generation of leaders focused on addressing the technical challenges of clinical medicine.
Requirements
Program Requirements
Program Requirements
Complete the BMP Core and Depth Curriculum (31 or more units).
Meet the university residency requirements for a PhD degree consisting of a minimum of 135 Stanford units, with a maximum of 45 of these units being external transfer credits.
Achieve a cumulative GPA of 3.0 or greater to maintain good academic standing.
All courses taken for the program must be completed with a letter grade and must be passed with a grade of B- or better.
Qualifying examination. PhD students will be expected to take and pass an oral qualifying examination during their second year in the program. Students will assemble a qualifying examination committee of eligible faculty per university rules. Following the general structure used in other SoM programs, the examination will consist of a written and oral portion. The written portion will be a 5-page NIH-style proposal of the thesis research, to be distributed to the qualifying examination committee at least one week before the oral examination. The student will present the proposal in a short talk at the oral examination. Qualifying examination committee members will then question the candidate on the proposed research and the underlying science. The examination will cover the proposal and foundational medical physics, imaging, and clinical diagnostics knowledge. The examination committee will then grade the student’s performance as either pass or fail. Students failing the examination will be allowed to retake it once. Students who fail the qualifying examination twice will be offered the option to exit the program with a Master’s degree, having completed the extent of coursework required by Stanford University for this degree.
After applying for Terminal Graduate Registration (TGR) status and completing 135 units, the PhD candidate should register each quarter for RAD 802 TGR PhD Dissertation so that their research effort may be counted toward the degree.
Course Requirements
Core Curriculum in Biomedical Physics (22 units). All students are expected to fulfill the following core requirements concerning basic principles of biomedical physics, professionalism and ethics, fundamentals of the human body, and quantitative and computational competencies. Note, given the nature of the subject matter, the curriculum has a structure similar to engineering PhDs, with greater emphasis on coursework compared to the School of Medicine Biosciences Program.
Touchstone Courses
Complete 9 units from the following courses in the first year.
Fundamentals of the Human Body
Complete 4 units. Below is a partial list of applicable classes. Other classes may be used for this requirement with the approval of the program director.
BIOE 300A
Molecular and Cellular Bioengineering
BIOE 300B
Quantitative Physiology
BIOE 301A
Molecular and Cellular Engineering Lab
BIOPHYS 294
Cellular Biophysics
MCP 256
How Cells Work: Energetics, Compartments, and Coupling in Cell Biology
Quantitation and Computation in Biomedical Physics
Complete 6 units from the following courses.
BMDS 241
Intermediate Biostatistics: Analysis of Discrete Data
BMP 260
Computational Methods for Biomedical Image Analysis and Interpretation
CS 229
Machine Learning
CS 230
Deep Learning
EE 261
The Fourier Transform and Its Applications
EE 278
Probability and Statistical Inference
EE 368
Digital Image Processing
STATS 200
Introduction to Theoretical Statistics
Depth Requirement
Depth Curriculum in Biomedical Physics (9 units). Each student will also be required to demonstrate depth in a chosen area by completing nine units within a single area of specialization, as given by the examples below or in consultation with their primary advisor. These depth areas are within the scope of the overall Biomedical Physics program and comprise courses that enable a student’s thesis research. Representative courses meeting this depth requirement from three possible areas of specialization (Radiation Physics, Imaging Science, and Molecular Imaging and Diagnostics) are given below.
Radiation Physics
The following courses are the recommended electives for this specialty.
BMP 221
Physics and Engineering of Radionuclide-based Medical Imaging
BMP 225
Transcranial Ultrasound Neuromodulation: Physics, Neurophysiology, and Applications
BMP 229
MRI Sequences and Signals
BMP 235
Advanced Ultrasound Imaging
BMP 251
Medical Physics and Dosimetry
BMP 252
Physics of Radiation Therapy
BMP 253
Biological Principles and Medical Applications of Ionizing Radiation
BMP 260
Computational Methods for Biomedical Image Analysis and Interpretation
CBIO 240
Molecular and Genetic Basis of Cancer
CBIO 242
Cellular and Clinical Aspects of Cancer
CBIO 243
Principles of Cancer Systems Biology
EE 369A
Medical Imaging Systems I
EE 369B
Medical Imaging Systems II
EE 369C
Medical Image Reconstruction
Imaging Science
The following courses are the recommended electives for this specialty.
BMP 206
Mixed-Reality in Medicine
BMP 221
Physics and Engineering of Radionuclide-based Medical Imaging
BMP 224
Probes and Applications for Multi-modality Molecular Imaging of Living Subjects
BMP 225
Transcranial Ultrasound Neuromodulation: Physics, Neurophysiology, and Applications
BMP 226
MRI Spin Physics, Relaxation Theory, and Contrast Mechanisms
BMP 227
Functional MRI Methods
BMP 229
MRI Sequences and Signals
BMP 235
Advanced Ultrasound Imaging
BMP 260
Computational Methods for Biomedical Image Analysis and Interpretation
EE 369A
Medical Imaging Systems I
EE 369B
Medical Imaging Systems II
EE 369C
Medical Image Reconstruction
EE 469B
RF Pulse Design for Magnetic Resonance Imaging
Molecular Imaging and Diagnostics
The following courses are the recommended electives for this specialty.
BIOC 224
Advanced Cell Biology
BIOE 217
Translational Bioinformatics
BIOE 241
Biological Macromolecules
BIOE 279
Computational Biology: Structure and Organization of Biomolecules and Cells
BIOE 450
Advances in Biotechnology
BMDS 212
Introduction to Biomedical Informatics Research Methodology
BMP 224
Probes and Applications for Multi-modality Molecular Imaging of Living Subjects
CBIO 240
Molecular and Genetic Basis of Cancer
CBIO 242
Cellular and Clinical Aspects of Cancer
CBIO 243
Principles of Cancer Systems Biology
CBIO 275
Tumor Immunology
EE 369A
Medical Imaging Systems I
EE 369B
Medical Imaging Systems II
EE 369C
Medical Image Reconstruction
IMMUNOL 201
Advanced Immunology I
IMMUNOL 205
Immunology in Health and Disease
IMMUNOL 206
Introduction to Applied Computational Tools in Immunology
Advancement to Candidacy
Advancement to Candidacy
To be admitted to candidacy for the PhD degree, a student will be in good academic standing and have successfully completed the core course requirements, at least 20 units of coursework in an area of specialization, and passed the qualifying examination. The student must fulfill these requirements and apply for admission to candidacy for the PhD by the beginning of the third year.
Oral Exam
Oral Exam
The University Oral Examination is taken after the student has substantially completed their research. See the Dissertation section for more details.
Dissertation
Dissertation Overview
After completing most of their thesis work and when deemed appropriate by the student and the thesis advisor, typically several months before the expected end of the student’s research, the student will coordinate a thesis defense. The defense committee will typically consist of the thesis committee, a defense chair from outside the program as per university rules, and one other faculty member. The defense will consist of an oral presentation of the thesis work, followed by questions about the thesis or other areas of research and scholarship deemed relevant to the research. Students must present a PhD dissertation that results from independent investigation and contributes to knowledge in biomedical physics. The process for the preparation of a dissertation will include:
The selection of a primary dissertation advisor and at least two additional faculty members to serve on the dissertation committee
The presentation of a prospectus outlining the proposed research to the committee (generally as part of the qualifying examination)
The receipt of written approval from the dissertation committee chair
The passing of the university oral examination, taken after the student has substantially completed their research
The submission of a final draft of the work signed by all members of the dissertation committee

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